Much to my amusement, I found out that the local newspaper, the Schwäbisches Tagblatt, picked up on our press release and published a nice little story. The title “Räubuerischer Schlund” translates to “Predatory Mouth”, referring to the toothy mouth Pristionchus pacificus uses to puncture its prey. Pretty cool! The image on this post is the same one used in the press release, and shows P. pacificus chomping down on C. elegans. Click HERE for a link to the article. It’s in German, so if you need to you can have a look at it in google translate.
Finally, after years of blood sweat and tears our comparative connectomics paper has been published. This represents a huge victory for myself and all of the people who have helped me along the way. It is rather humbling to have this work get the kind of exposure it gets by being published in Cell. It is the culmination of years of work, complete with with heart-breaking failures, long grinding hours on the microscope and in front of the computer, and the occasional adrenaline-inducing discovery. In the paper, we compare a wiring diagram(or connectome) of the pharyngeal nervous system of the nematode Pristionchus pacificus to that of the well-known model organism C. elegans. The data are obtained by Continue reading
Posted in Connectome, Electron Microscopy, Pristionchus pacificus, Science, Sommer Lab
Tagged Behavior, C. elegans, Caenorhabditis, Connectome, connectomics, graph theory, Nematode, Neural Circuit, P. pacificus, Pristionchus
One of the things that interests me about the nematode Pristionchus pacificus is that it is capable of taking advantage of many different food sources. Like it’s cousin and well known model organism Caenorhabditis elegans, this nematode can be raised on agar plates seeded with bacteria. Pristionchus can additionally feed on other sources, including other nematodes! These predatory feeding behaviors are quite distinct from bacterial feeding. For instance, Pristionchus has tooth-like denticles in its mouth opening that are highly active during predatory but not bacterial feeding. This increase in the complexity of the P. pacificus
behavioral palette is most interesting when you consider that the nervous systems are composed of a nearly identical set of neurons. So how do you teach an old nervous system to do new tricks? This is one of my primary motivations for comparing networks of synaptic connectivity between these two species.
Posted in Caenorhabditis elegans, Connectome, Nematode, Pristionchus pacificus, Science, Sommer Lab
Tagged Behavior, Caenorhabditis elegans, Connectome, Nematode, Pristionchus pacificus, Video
Reconstructing neurons from thousands of images is typically a very dull, repetitive and labor intensive task. Some would say that the long periods of monotony, broken by occasional excitement caused by an unexpected discovery, is enough to drive you insane. Yet it is how I spent much of my time. Either because I have gone crazy or more likely out of a need to amuse myself with the task I have started to notice faces in the micrographs. This is not all that surprising really. As humans we are really pre-programmed to recognize anything that has the same proportions as a face… all we need are two dots for eyes something that looks like a mouth in the right places. As mitochondria are typically tube shaped they can very easily substitute for a mouth or a pair of eyes in an image, so most of them time these are what construct the features of the face. Sometimes, the inner membranes of the mitochondria even stain in such a way as to resemble teeth in the mouth! Perhaps it is a reflection of optimism that the vast majority of faces that I notice are smiley faces. For anyone that is amused, I’ve started collecting them and have uploaded them to a Flickr gallery. Click HERE for the link!